rs47559597 SNP Detail

Summary

• ID
  rs47559597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTGCTT TTCCCAGTGC
  AGAACACAGG TGGCCCTGCA TGTGGTGACT TGGAAAATTG GGGTGCAGAA GCCCCAGTAA
  TCCTGCCTGG CTCTTCAGGT TCTGGGCCCC AAGCCTGCTC TGAAGGAGGG TAACCCCGAG
  GAAGACATTA CAGCTGACCA GACCAACGCC CAGGCTGCAG CCCTGTATAA GGTAGGCACT
  R
  CAGGCCTGCT GGGGATTGGC CTGGTGTGAG ATCCTGCACA GAGCATCTGC AGGTGGCCAG
  GGTACAGAGC TGAAGGGAAG AGGCTGTGGG AAGGCTGGGC CAGGGCTCAG GTAGGTTTGT
  GGGGACTGGA GGAGAGATGG TGGGAAGGAC GCCCTCTGAG AAAGAGAATG GTATTCACTT
  CCAGCCCCTG GTGAAGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133285610	ENSMUSSNP1392562	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47559597					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535250 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	924 bp downstream
Tssr57148	transcription start site region 57148	406 bp upstream
Tssr57149	transcription start site region 57149	499 bp upstream
Tssr61469	transcription start site region 61469	452 bp upstream