rs47560172 SNP Detail

Summary

• ID
  rs47560172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87194012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTCTCT ACCGCCAAGG
  ACCTGTCGTG CCTCCGATGA ATCCCGCCCA CTTCGCGCCC TCAAGCCAAT CAGAGGGTGG
  CGTCACTCCC TCTCAGTTGC CATGGTGCCC GCCAAGTCCT TTCCGCCACT TACCAGATGT
  GAGCAGGCTG GTCCAGCCGG TGAAAGCGGG TGGCAAAGGA CAGCAGCGTC ACCACAGCCA
  R
  CGTGGCCCAC CACCCTGCCG CCTGGAAGCG CCGCGAGCTC CAAGCAGGCC GTTTAAGTTT
  CCGTGCTGCA GCCTGGGGGA CCACGTCTCG GCTCACGGCT CTGGCAGCCT GCGGCACACA
  GCGGCCCCTA CGGGGACGCA GCTCGGAGCC CGCTAGGCCA CCGCCTATGG CCGGCGGCAT
  CCTCCCCTTC CGAAGGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451852	NES15431692	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47560172					SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451852	NES15431692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87194012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	within coordinates
Rr403430	regulatory region 403430	285 bp upstream
Rr470321	regulatory region 470321	63 bp distal
Rr470322	regulatory region 470322	114 bp distal
Rr470323	regulatory region 470323	within coordinates
Rr470324	regulatory region 470324	247 bp proximal
Rr470325	regulatory region 470325	654 bp proximal
Tssr114506	transcription start site region 114506	37 bp downstream
Tssr114507	transcription start site region 114507	465 bp upstream
Tssr114508	transcription start site region 114508	547 bp upstream
Tssr114509	transcription start site region 114509	732 bp upstream
Tssr117156	transcription start site region 117156	180 bp downstream
Tssr117157	transcription start site region 117157	246 bp downstream
Tssr117158	transcription start site region 117158	645 bp downstream