rs47561512 SNP Detail

Summary

• ID
  rs47561512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109560569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCATCAT TGTATAGCAT
  ACTTGGGTAG TTCTGCATTG TCATCTGGCA GAGCACGACA AACTCATGGT AGTCTCTGCG
  ATCTCCAGAG AAGGGCCTGA GGGAGGGCAG GCGACCTTCG TTGATAGCCT GCATCATGAG
  CCTTTCTGCC ACTCTCTGTT GTTCTTTTAG GTCTTGCATC CGGAGGAACA GCGAGATGAC
  R
  TTCCCCATGG TGGCCACGAC TTCTTCTGGA GAGTTCTTGG GCTGACCTTC CTCTTCACCA
  CCTTCCTCTT CCTCCTCTTC CTCGTCATCT CCCAGGTCAG TATCATCTTG GTCTGACTGG
  GTCTCGGATG AGTTGATTGT TTCATCCATG CTATAATCGG ATGCCTCACT GAGTGGTTCC
  GACCCTTCCT GGTTTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717604	NES17648272	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47561512					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717604	NES17648272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109560569 () rs orientation: forward

Symbol	Name	Function Class
1110006E14Rik	RIKEN cDNA 1110006E14 gene	1670 bp upstream
6430411K18Rik	RIKEN cDNA 6430411K18 gen	1284 bp downstream
Mir127	microRNA 127	1220 bp downstream
Mir136	microRNA 136	1192 bp upstream
Mir432	microRNA 432	821 bp upstream
Mir434	microRNA 434	371 bp upstream
Mir3071	microRNA 3071	1183 bp downstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rr472784	regulatory region 472784	1450 bp proximal
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115135	transcription start site region 115135	1252 bp upstream