rs47562555 SNP Detail

Summary

• ID
  rs47562555
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GCAAAGGGGT GCCTTCTTGA
  G
  TTAAGGTGCA TCTGTGAGTT CGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809996	ENSMUSSNP3003135	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320711455	CHEV_3_37540462	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47562555					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	124 bp distal
Gm42922	predicted gene 42922	315 bp upstream
Rr575523	regulatory region 575523	1450 bp distal
Rr575524	regulatory region 575524	77 bp distal
Rr575525	regulatory region 575525	743 bp distal
Rr575526	regulatory region 575526	635 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1847 bp downstream
Tssr28909	transcription start site region 28909	1628 bp downstream
Tssr28910	transcription start site region 28910	1597 bp downstream
Tssr28911	transcription start site region 28911	1576 bp downstream
Tssr28912	transcription start site region 28912	1554 bp downstream
Tssr28913	transcription start site region 28913	1726 bp upstream