rs47562573 SNP Detail

Summary

• ID
  rs47562573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35113125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGTAAA GTAAATCCAT
  ATGAGGATCC TGGGTTCATT ATTCTTAGGA CAAGCCTTGG ATGTAGGACT TAAGTGGCAA
  CTCCTTTTGA CAATCAGTAC CATGTCTCAC CAGAAAGAGT CACAGAAGTG GACAGATCCA
  TTCTAACAGA GGATAAAAAC AGAATGTGGT GGTAACGCCA CCACCTACAA CCATCCCAGT
  R
  GGCTACTTGC TCTATAAAGT AACACAAGCT ACAGCTATCT AGCTGATATA TCAGAGAGAA
  CAATTAAGCT TTACTCTTAA AAAGACTTTA TGAGGGGCTG GTGAGATGGC TCAGTGGTTA
  AGAGCGCCGA CTGCTCTTCC GAAGGTCCCG AGTTCAAATC CCAGCAACCA CATGGTGGCT
  CACAACCATC CGTAACGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60718112	NES16346990	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A
ss148903650	ENSMUSSNP5880765	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47562573					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718112	NES16346990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35113125 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	657 bp proximal
Gm53547	predicted gene, 53547	within coordinates