rs47562638 SNP Detail

Summary

• ID
  rs47562638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATAGTGT TTATTACAGC
  AAAGCAACTT AAGAGGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGATC
  TCATGCCCTC TATTACTCTA ATCCACTGTA AAAGTGCACT CAGAACTGAG CATCCTTAAC
  AGTTATTCTA TTTTTCTCCA GTAAGAGAAA TGCCAAGATT TCAGGCTGTG GACTGTGTTC
  Y
  AGTGGCAAGC AGCAGAGATC CATGTTTAGC TTGTGTGGGT ATTTTTTTTT ATTAAAAATG
  TTTGTAAATT TGTTTTGTGT ATATGGGTGG TTTGTACAGA GACAATGGTA GAGAAAGACT
  AAATAGGGGG AGTTTACGCA GCAGAGACAT AAACAAGTGA AATTTGTGAA TTTTACTTTC
  AGGTTTCCTT GTGATTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63231305	NES17473167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		T	C	T		C
ss325739976	CHEV_19_20510599	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47562638					SNP	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231305	NES17473167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413473 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	20 bp distal
Gm32689	predicted gene, 32689	854 bp upstream
Gm41816	predicted gene, 41816	1645 bp upstream
Rr356916	regulatory region 356916	1073 bp distal
Rr356917	regulatory region 356917	928 bp proximal
Rr361508	regulatory region 361508	941 bp proximal
Rr364130	regulatory region 364130	1203 bp distal