rs47563124 SNP Detail

Summary

• ID
  rs47563124
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14463528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCTAGC CCTAGCCGTA
  GCCCTAACCC TAACCCTAGC CCTAGCCGTA GCCCTAACCC TAACCCTAGC CCTAGCCCTA
  GCCCTAGCCC TAACCCTAAC CCTAACCCTA ACCCTAACCC TAACCCTAAC CCTAACCCTA
  ACCCTAACCC TAACCCTATG CAACTTCATG TGAGGAGCAA AAGCTGCCTT AGAGATGGCC
  K
  TGGTTCACAG GATGTGTTGC TGCCACAGCT CTGTCTTGGG GGAAGATTTT AGAACCAAGG
  ATCATATTTG GGGTTGGGAG GGGAAAAAGA AACTGAGCAG CTGAAAGAAT ACTCTTTACT
  AGTTTTTGGA TGTTTTGGTG ACTAGATCAG TTATTGTGCT GTGACTTCAA AAAGAAGGGC
  AGAGGTGTCA CCTTTAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62079956	NES17153410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47563124					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62079956	NES17153410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14463528 () rs orientation: forward

Symbol	Name	Function Class
Abhd6	abhydrolase domain containing 6	within coordinates
Rr296822	regulatory region 296822	1672 bp proximal
Tssr124225	transcription start site region 124225	287 bp upstream
Tssr124226	transcription start site region 124226	345 bp upstream