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rs47564179 SNP Detail
Summary
  • ID
    rs47564179
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr17:15420300 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGACCCTTGC CAGCTACTGA
    GATTCACAGT GTTCCACAGT CATGGGATCT CACGGGCTGG GAGTTCTCAT AGCTCTGGGG
    TCCTTTGTCT TGGGGTTCTC ACAGTCCTGG ATTTTTATAA CCATGGAGTT CCATAGTCCT
    GAAGTCCCGC AGCCCTGGAG TCCAATAGTC CTTAGGATCT TCCTTATTCA AATTTTGTCC
    W
    TTAGGCCATG ATGTCCCTTG CCTTTGAGTG CCTTCAATCT GTTTCCAACA TCAGCGTCCC
    TGCCATGACA GTTTCTTTGG GTGTAAGTCA CTATTATCAC ACACTACTCC TGCTCTCCTG
    AGATGGCATG CCAACCACGT GACCAGCCCT GCTAGGGCAT GGGCTACACT CCTGGAGTGC
    CTTTGCCAAA CTGGGGGCTA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60539067 NES16556280 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47564179 SNP T T T T T T T T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60539067 NES16556280 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:15420300 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm35502 predicted gene, 35502 within coordinates
Rr329518 regulatory region 329518 900 bp distal
Rr334312 regulatory region 334312 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory