rs47566442 SNP Detail

Summary

• ID
  rs47566442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3625123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGCACGA TCTTGCAGAA
  AGCCAGAGCT CTTGGACCTT GCTAATCTTA ACCTAGCCAG CTTGTCTTAA GGGTCCTCTG
  ACTTACCTCC CCAAATGCTG GGGTTACAGG TGGTCTATCA TGCTAGACAG GCATTTAAAT
  GAGTGCTAGG GACCCAAACT CCAGTTCTCA AACTTGCAAG GTAAGTGTTG CAGTCACTAA
  R
  CCACCTCTCC AGCCCGAGTC TGTGCGCTTA GGTAATGCTG ACCAACTAAG GGTTCAAAGT
  CTTGTTTCTT AACTCGGTAA ACACAGAAGT GGGTGTTGGT AGGGATTTCA TACTCTTTGT
  CAATAATTTG TGAATTTAAG CATCAGACTT CCTCAGGAGA ACCCATGTGG CCACTAGAAA
  CTAATCAGAA TCTGAGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146262576	ENSMUSSNP1136657	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47566442					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3625123 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	within coordinates