rs47566522 SNP Detail

Summary

• ID
  rs47566522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT TAATCATCAT TATTACTATT
  M
  TTATTCAGGC TTCAAAGCCA CGTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139812874	ENSMUSSNP1868003	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss324677535	CHEV_14_79789924	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47566522					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	within coordinates
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	529 bp upstream
Rr496090	regulatory region 496090	within coordinates
Rr496091	regulatory region 496091	586 bp proximal
Rr496092	regulatory region 496092	651 bp proximal
Rr496093	regulatory region 496093	674 bp proximal
Tssr129900	transcription start site region 129900	696 bp upstream
Tssr129901	transcription start site region 129901	522 bp downstream
Tssr129902	transcription start site region 129902	549 bp downstream