rs47566995 SNP Detail

Summary

• ID
  rs47566995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC TGGGTTAGAA GCTAGCATAT
  R
  TGCTAGCTTC TAACAGAATT TTGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148223102	ENSMUSSNP4157734	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320605478	CHEV_2_164159623	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47566995					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175807 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	553 bp downstream
Tssr745	transcription start site region 745	510 bp downstream
Tssr746	transcription start site region 746	503 bp downstream
Tssr747	transcription start site region 747	490 bp upstream
Tssr748	transcription start site region 748	465 bp downstream
Tssr749	transcription start site region 749	428 bp downstream
Tssr750	transcription start site region 750	411 bp downstream
Tssr751	transcription start site region 751	359 bp downstream
Tssr752	transcription start site region 752	297 bp downstream
Tssr753	transcription start site region 753	287 bp downstream
Tssr754	transcription start site region 754	377 bp upstream
Tssr21562	transcription start site region 21562	1151 bp downstream
Tssr21563	transcription start site region 21563	1142 bp downstream
Tssr21564	transcription start site region 21564	1111 bp downstream
Tssr21565	transcription start site region 21565	1098 bp downstream
Tssr21566	transcription start site region 21566	1087 bp downstream
Tssr21567	transcription start site region 21567	1075 bp downstream
Tssr21568	transcription start site region 21568	1066 bp downstream
Tssr21569	transcription start site region 21569	561 bp downstream
Tssr21570	transcription start site region 21570	519 bp downstream
Tssr21571	transcription start site region 21571	491 bp downstream
Tssr21572	transcription start site region 21572	477 bp downstream
Tssr21573	transcription start site region 21573	446 bp downstream
Tssr21574	transcription start site region 21574	384 bp downstream
Tssr21575	transcription start site region 21575	389 bp upstream
Tssr21576	transcription start site region 21576	405 bp upstream
Tssr21577	transcription start site region 21577	424 bp upstream
Tssr27433	transcription start site region 27433	531 bp upstream
Tssr27434	transcription start site region 27434	501 bp upstream
Tssr27435	transcription start site region 27435	476 bp upstream
Tssr27436	transcription start site region 27436	459 bp upstream
Tssr27437	transcription start site region 27437	418 bp upstream
Tssr27438	transcription start site region 27438	401 bp upstream
Tssr27439	transcription start site region 27439	396 bp upstream
Tssr27440	transcription start site region 27440	380 bp upstream
Tssr27441	transcription start site region 27441	331 bp upstream
Tssr27442	transcription start site region 27442	321 bp upstream
Tssr27443	transcription start site region 27443	262 bp upstream
Tssr27444	transcription start site region 27444	251 bp upstream
Tssr27445	transcription start site region 27445	362 bp downstream
Tssr27446	transcription start site region 27446	406 bp downstream
Tssr27447	transcription start site region 27447	501 bp downstream
Tssr27448	transcription start site region 27448	1115 bp downstream