rs47567856 SNP Detail

Summary

• ID
  rs47567856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142605898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGAAGC AGCCCCATTG
  CCCTTCAGTT TGGGGAAGGG AATGCCAAGA TTTCACAGGA ATATCATCTA TGATGACAGC
  AGCCATTCCT CACCCGGGAA GGAAGCACCT CTGCCCTCTG AATCTTTCCT CACTTCCTTA
  TTAATCCCAG CTTTCAGGGA ACCAGCTAGA GGATGGAGGA TGGACTCTTG GAAGGCACAG
  Y
  CAGGATGGCA TGAATATTTG AAGGTGCCCC TGAGGGTTCT CGAGCCTAAA GACTGGCTAA
  AGACATTGGG TACACTATTG ACCTTCCCAA ATGCAGCCTC CAGAACTGCA GCCAGGAACT
  CTATCTGTGA GATAGGGGAT TAGCAAGGCT ACAAAGAATT CCATTCTAGA CCTTCAGGCC
  CACGGAGTTG CTGCCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473930	CHEV_7_150238066	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47567856					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142605898 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	589 bp upstream
Cpgi19971	CpG island 19971	267 bp proximal
R74862	expressed sequence R74862	within coordinates
Rr167007	regulatory region 167007	within coordinates
Rr381609	regulatory region 381609	1291 bp downstream
Rr381610	regulatory region 381610	1323 bp upstream
Rr400727	regulatory region 400727	396 bp upstream
Tssr70268	transcription start site region 70268	591 bp upstream
Tssr70269	transcription start site region 70269	615 bp upstream
Tssr70270	transcription start site region 70270	1313 bp upstream
Tssr70271	transcription start site region 70271	1356 bp upstream
Tssr70272	transcription start site region 70272	1393 bp upstream
Tssr75917	transcription start site region 75917	1218 bp downstream