rs47567936 SNP Detail

Summary

• ID
  rs47567936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGTTC TGACTGTGCC
  TAGCCAGGGC TGTACAGTAA TGAGGTTGCT CAGACTCTGT GTGCTCTGCT AGGACCCTGT
  GTTTTACATG ACGTTACTGG CATGTGTGAC CTCTAACATG ACAATACCTG AAAAGGTTTT
  ACTTTGTATT AGTAGAAATC AAAGGATTAC TGAAATAAGT GTGTGTGCGC GTGTGTGTCA
  R
  TAAATTCATC ATTATTAAGC AGTTTACATT CTTGTGTGTC TAGTGATAGG GGTCCTTTCC
  AGACACCTAT GTGTGGATAA TTTGTGGGAC CCAGGCTTCC TTTTAACCTG GTGCCTTGCC
  TCTGAGAAGA ATTCCAAAGA GAACGGGCTA GGTGGATGAC CTGCAGTGGC AGACCATTGG
  CAGAGGAAGT GGATCTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148811259	ENSMUSSNP5832248	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss324295889	CHEV_13_24466099	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47567936					SNP	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558213 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	369 bp proximal
Rr476039	regulatory region 476039	1111 bp proximal
Rr476040	regulatory region 476040	1710 bp proximal
Tssr4016	transcription start site region 4016	1820 bp upstream
Tssr118891	transcription start site region 118891	713 bp downstream
Tssr118892	transcription start site region 118892	1804 bp upstream
Tssr118893	transcription start site region 118893	1840 bp upstream
Tssr118894	transcription start site region 118894	1904 bp upstream
Tssr118895	transcription start site region 118895	1938 bp upstream
Tssr121784	transcription start site region 121784	1712 bp downstream
Tssr121785	transcription start site region 121785	1732 bp downstream
Tssr121786	transcription start site region 121786	1792 bp downstream