rs47568001 SNP Detail

Summary

• ID
  rs47568001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTCAG GACAGCCAGG
  GCTATACAGA GAAACCCTGT CTCAGAAAAA CAACAACAAA AAAGAAAAAA AAAAAAAAGA
  AAAAACAACC CCACAGTTGG GTGTGGTGGC GCATGCCCAT AACTGCACCC CTTTAAATGC
  TGAGGTAGAA GCCTGGGGCC AGCCTGGGCT ATATAGTGAA TACCAGCTCA GTCAGGCCTG
  M
  ATAATAACAA GGCCTCTTCC CCCCAAACAA CAGACGAAAC CAACCAACAG CCAAGTCAAC
  CCAAGTCCAT TCCTGAATTG TTTTCTTCAG GGTGATGACG CACTTATGGA CCTGTAAGGA
  TGGCTCAGTG GCTTTAGAGT AGTGGCGACT CTTCCAGAGG CCATGGGTGT ATTTCCTAGC
  ACCCAGGTGG AAGCTTACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396096	ENSMUSSNP670407	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47568001					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387199 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	509 bp downstream
Gm47204	predicted gene, 47204	810 bp downstream
Rr195028	regulatory region 195028	2 bp proximal
Rr203857	regulatory region 203857	41 bp proximal
Rr206312	regulatory region 206312	1601 bp proximal
Rr209142	regulatory region 209142	999 bp distal
Rr209143	regulatory region 209143	402 bp proximal