rs47568828 SNP Detail

Summary

• ID
  rs47568828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCATGCC CTCAAGCTCA
  GCCCATTAGG TGTAGCTCCT CCAACCAGTT TTAGCCCCTC CCACAAAGCT TAGCTCCCCC
  TATCAAGCCT ACCTCCATTT TCCAAGCCTA GCTTTTCCAT CAAGCTAAGG GTGTCACACT
  CAGTTCTGCA GATCATACCT GGCTCCTCCC TCAAGTTGCT ATACCCTTCC ACTCCTCAGG
  Y
  TCCTCCAGTT CTGGCCTTGG TTTCTCTAGA TGGGCTACTC TATTGTAAAT CCTGGTGTCT
  TAGCTCAAAA CCCAGCCCAT GTGTGACCTC TTTCATAACT GTAGCTCTCA AGGTCCCACC
  CAGCAATCCC TGACCCCACA CCATTCCCTG GCCCCACTCC TCCCACTTCT CTGGGATTGG
  AGGCAGAAAG AGTAGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076718	NES16055130	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47568828					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076718	NES16055130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648442 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	Intron
Rr381636	regulatory region 381636	within coordinates
Rr658946	regulatory region 658946	862 bp proximal
Tssr76064	transcription start site region 76064	1918 bp downstream
Tssr76065	transcription start site region 76065	117 bp downstream
Tssr76066	transcription start site region 76066	93 bp downstream
Tssr76067	transcription start site region 76067	73 bp downstream
Tssr76068	transcription start site region 76068	41 bp downstream
Tssr76069	transcription start site region 76069	1 bp upstream
Tssr76070	transcription start site region 76070	151 bp upstream
Tssr76071	transcription start site region 76071	200 bp upstream
Tssr76072	transcription start site region 76072	1079 bp upstream