rs47570267 SNP Detail

Summary

• ID
  rs47570267
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTTAG TCATCACTTC
  TTCACATTAC GTTGTATTCA CATCTCACGC TACAAACTCC AAAAACAGCA CTGAAAACTA
  AAAGGCAAAT GGAGTCTCTG CTAACCAAGG ACTAACAGCG AAGGTTCCCT GGACAAACTC
  TATGTACTTT TGTCTTTTAA TGGCACACAA GCCAGCATGC TGAGGCTGAG ACTCATACAC
  T
  ACGCAGTGGT AGAGGAGTTT GACCCTGACC CTATTTTCCA ACAGGCTTAT AAAGGCAAAA
  TCCACAACCT AGAGGGAGGT TGACATCCCC TGCATGACAT CCTGGGAACT GTAGTCTCCC
  AGGGAGACGT GAGTGCCTAC AATATCCTGG TGCATGCTGG GACATGTAGT CAGACTGCTT
  ACACGCCCAA TAGGAATCGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351749	ENSMUSSNP2629989	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47570267					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810563 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	426 bp upstream
Cpgi1085	CpG island 1085	91 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1306 bp distal
Rr29061	regulatory region 29061	within coordinates
Rr396636	regulatory region 396636	47 bp upstream
Tssr10371	transcription start site region 10371	430 bp upstream
Tssr10372	transcription start site region 10372	469 bp upstream