rs47571100 SNP Detail

Summary

• ID
  rs47571100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36477852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGATGCT CTGAGACCCA
  GAATACGCAC CTTTACCGAG GCATTGGTCT AGACCCTCCC TTTCTTAGAA TGTACCTTAG
  CCAACGTAAC TGGCATGGTG CTCTTTCCAT GAATGGCGAG GGCACAAAGG ATTTGGCAGT
  TTACAGTTCA GTTTCACTGT GGACGGGGAA CTCCCACGAT GCCTGGTATT CTTGCAGGTG
  K
  TGGATGTCTG GAGGACCCAG CCAGGGTAAC TAGAAACTAG CTCTCCTCCT TTGGAGATGG
  GGTCTTATGT ATGCCAGGCT GCTCCAGAAC TTGCTATGTA GCTGAAGACA ACTTTGAACA
  AGAGTTCCTA TGTTCCTGCT TCTACTTCCC AATTCCTGGG ACTACGGGTA TGTACGACCA
  CTGCCAGTTT TATACGGCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146948411	ENSMUSSNP463748	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47571100					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36477852 () rs orientation: forward

Symbol	Name	Function Class
Rr536102	regulatory region 536102	1852 bp distal
Rr536103	regulatory region 536103	1939 bp distal
Rr536104	regulatory region 536104	102 bp distal
Rr536105	regulatory region 536105	852 bp proximal
Rr536106	regulatory region 536106	939 bp proximal
Tssr150615	transcription start site region 150615	1866 bp downstream
Tssr150616	transcription start site region 150616	1849 bp downstream
Tssr150617	transcription start site region 150617	1683 bp downstream
Tssr150618	transcription start site region 150618	210 bp downstream