rs47571710 SNP Detail

Summary

• ID
  rs47571710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149378811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTC CTCTAGAGAG AAAGGAATCT
  R
  GATGAGAGAA TAAGGTTCTG CATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134502028	ENSMUSSNP6857302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325985193	CHEV_X_147030358	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47571710					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149378811 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1			Intron
				Noncoding-Transcript-Variant
Rr694332	regulatory region 694332			119 bp distal
Tssr162315	transcription start site region 162315			1870 bp downstream
Tssr162316	transcription start site region 162316			1479 bp downstream
Tssr162317	transcription start site region 162317			1457 bp downstream
Tssr162318	transcription start site region 162318			1402 bp downstream
Tssr162319	transcription start site region 162319			1369 bp downstream
Tssr164369	transcription start site region 164369			1034 bp upstream