rs47572071 SNP Detail

Summary

• ID
  rs47572071
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96078817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAC TGAGAAGCCT CGGGTTAGGT
  A
  CCGCCCCCAG CCTCCGCCTG GCTTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145643118	ENSMUSSNP3314108	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322811403	CHEV_8_97876089	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47572071					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96078817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	within coordinates
Mmp15	matrix metallopeptidase 15	107 bp upstream
Rr668226	regulatory region 668226	within coordinates
Rr668227	regulatory region 668227	90 bp proximal
Tssr78982	transcription start site region 78982	47 bp upstream
Tssr78983	transcription start site region 78983	69 bp upstream