rs47572400 SNP Detail

Summary

• ID
  rs47572400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115951619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGGCT GACTATAGCA
  CTGTTCTTGG TGAGCTGCTC TGAATAAACT GTGATCATTG GTCAGTACTT AGCTATGAGT
  TCTATAAAGC ACAAAAATAA ATCAAGAAGC TGAAGTTAAT ACAATAGAAC ATCTGTAATC
  TGTAATTTAA AAAAAAACTC AATTTTATTA TTTAGTTGGT ATAACTCAAG CATCACAACT
  K
  GGAAGATGGG AATAAATTAT TTTGAAGGGA AATGGAGAGA AGAGAGGCTC TCATAGTCCG
  AATTAGCCTC AAAGGAAACA CGTGGTCGCT GAGGCTAATC TCTCATGTGC TGAGACTCCA
  AGTGTGCCCT ACCACATACA ATCCCATCAT TTGCTAATTA AGCATTATTA GAAATGGAAA
  TTACTCTGAT AATTCCAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318580	NES16925655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47572400					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318580	NES16925655	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115951619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2211	CpG island 2211	1309 bp distal
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr221625	regulatory region 221625	215 bp proximal
Tssr99340	transcription start site region 99340	1834 bp upstream
Tssr99341	transcription start site region 99341	1781 bp upstream
Tssr99342	transcription start site region 99342	1773 bp upstream
Tssr99343	transcription start site region 99343	1765 bp upstream
Tssr99344	transcription start site region 99344	1757 bp upstream
Tssr99345	transcription start site region 99345	1451 bp upstream
Tssr99346	transcription start site region 99346	1435 bp upstream
Tssr99347	transcription start site region 99347	1415 bp upstream