rs47573343 SNP Detail

Summary

• ID
  rs47573343
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91856215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AAAACAAAAG CAACCGTTGT
  S
  CTTTTTTTGA GCGTTTGGAA GCAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148559142	ENSMUSSNP5732445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47573343					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91856215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8465	CpG island 8465	119 bp distal
Gm49711	predicted gene, 49711	within coordinates
Mrps6	mitochondrial ribosomal protein S6	within coordinates
Rr519574	regulatory region 519574	995 bp distal
Rr519575	regulatory region 519575	within coordinates
Slc5a3	solute carrier family 5 (inositol transporters), member 3	within coordinates
Tssr139459	transcription start site region 139459	1241 bp downstream
Tssr139460	transcription start site region 139460	999 bp downstream
Tssr139461	transcription start site region 139461	823 bp upstream