rs47573616 SNP Detail

Summary

• ID
  rs47573616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATTATGG GGATAGAGGA GTGGGTACAA ACCCCAGGTG
  CCCAAGTCAC TAAACACATC CACATGCACC ATTAAACAGC ATGTCACATC CCCCAGCTGA
  R
  TGACTGAGAA ATGTCAAAGT CACCCAAGAA TAAAGTGTAA GGGAATGAGG AATTAGGTTT
  CCATCGCTCT TCAGAGTAAC CTTACATGCC TTACCTAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132135313	ENSMUSSNP2582416	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47573616					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	643 bp proximal
Gm30927	predicted gene, 30927	1253 bp upstream
Rr447212	regulatory region 447212	896 bp distal
Rr447213	regulatory region 447213	469 bp proximal
Rr447214	regulatory region 447214	1142 bp proximal
Rr447215	regulatory region 447215	1544 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1247 bp upstream
Tssr101465	transcription start site region 101465	1266 bp upstream
Tssr107965	transcription start site region 107965	1109 bp downstream
Tssr107966	transcription start site region 107966	1171 bp downstream
Tssr107967	transcription start site region 107967	1493 bp downstream
Tssr107968	transcription start site region 107968	1518 bp downstream
Tssr107969	transcription start site region 107969	1576 bp downstream