rs47574161 SNP Detail

Summary

• ID
  rs47574161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGAAAG ACAAAACAAA
  GTAGCTAAAT TCAAACCAGA AGTGAAGTAG CATAGATGTC TCATTTCTGT TTACGTTTGA
  CTTATACAAT ATTTAAATAT CATAAGTATT GCTTTTTTAA ATCCACAAAC TGCTTGAGAA
  ATTCTGGAAA CTGGTTATCT GGAGGGAAAT GTTTTGAGAA GTGGAAAGGA ACATCACTAA
  Y
  TATCAGTCAA CATCACTTAT ATAAGTTGTG CTCTGAATAT CACAATAGCT GAAAATTCCT
  TAACATTTAA TAACTCGCAA TCCTTCTTTG ATTTTCTTTT TCTCAAGTTC TAAAACTTGT
  AAAATAAGCA TATCATAAAA AAAGAAATGA GAGTGTAGAA GTTAAGCTAT GAAGCATGTT
  CTGAATCAAA TATATAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61734981	NES17669794	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47574161					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734981	NES17669794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	1329 bp proximal
Rr474318	regulatory region 474318	933 bp proximal
Tmem196	transmembrane protein 196	1285 bp upstream
Tssr115576	transcription start site region 115576	1567 bp upstream