rs47574960 SNP Detail

Summary

• ID
  rs47574960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138724446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAACC AGAGGGTCAT
  CTCTTAGACC TGGAGTTATA GGCAACTGAA GTTCCCTAGC CTGTGAGCAA AGAACCAAAC
  TAGGGTCCCC TACAAAAGCA ATGCATACTC TTCACCACTG ATCTGTCTCT CCATACCCCA
  GCCCCAAGTG CTGTTTTAAA TCATGAATGT AGAGTCCTCA AAGATCACAG ACAAATCACA
  Y
  GGCATTGTCC TCAGATTCAA GGAGCTCTTA ATCTCAGGAG AAAAGATGAA CGCAGGCCAT
  GACACTAAAA CAATGTGTAC CAGACACAGC ACAAACAGTG GAAAGTCAGC CATTTTCTTT
  ACCAGGTAAA CCACATGAAG CCCTGGCATT TCTAAGGATG GAAATAGTGT TAGCTTTTTA
  TATTTCAGTG AACTTTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60805896	NES16482640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs47574960					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805896	NES16482640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138724446 () rs orientation: forward

Symbol	Name	Function Class
Gm70139	predicted gene, 70139	1189 bp downstream