rs47575140 SNP Detail

Summary

• ID
  rs47575140
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89604521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTACCTG TAACTCCAGT
  TCTAGTGGAT GGCACTCCCA CACAGGCATA CATGCAGGCA AAACACCAAC GCACATAAAT
  TAGAAATAAA GTCAAGACTG AGTTTATTCT TGCCATCATT AATAAGTGAT AATTCCCAGG
  GAGGCATATA CTGCTGGTTA AATGTGTTAT TACTATAAAT ATACATGAAT GGTTTGAATG
  M
  TGCTGTCAAG AAAGAGTACT AAATGAACAT CTTAATTTGA CAAATCAGAG TGTGTGCAGA
  TGCCCTTATA AGCATCAAAA AATAATCCAG AGATGAAAAT TATTCAAAGG GAAATCTATA
  AAATAACACC TAAACTGTAC AATAAAAGGC TAAATTAGGG TTTAGAGATC ATCTGGAAAA
  AAATCAATGG AAACATCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194472	NES16707020	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47575140					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194472	NES16707020	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89604521 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	744 bp distal
Rr614259	regulatory region 614259	927 bp distal
Rr614260	regulatory region 614260	1226 bp proximal
Tssr51725	transcription start site region 51725	1101 bp downstream