rs47575505 SNP Detail

Summary

• ID
  rs47575505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77872385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGGGAA GGCCTGGCAG
  CAGGAACAGG AAGCAGAGGA AGACTTGAAT CCCTGAAGCC TGGCCTAGTG ATGAGCCTCC
  ACCCCCTGTA AGTTGTCACA TCCCCAAACA GTGCCACCAA CTCCATGGGA GGCGCTTTTC
  ATTCAAATCA ACACAGGGAC GCAGACATAG CTGCCAGCGG TCCCATGAAC ATCAGACTGA
  M
  AGTAGAAAGA GGAAGGTACT ACACTGGGGA TGCAGGGATA GTAGTTCATG TCCAGTTGTC
  TGGCCTGGAG TTAAGAGGTT GATTTAGGGC CAGTGAGATG GCTCAGTCGA GTAAGGTGCT
  TGCTGCGGAA GCCTACAGCC TGTAGACTTG ATAGAGTCCT TGTAAAAGTG AAGGAGAGAA
  TCTACGTCAC AAAGTTGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63193973	NES17463831	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C	C	C	C	C	C	C	C	C
ss147555442	ENSMUSSNP4768629	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47575505					SNP	A	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193973	NES17463831	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77872385 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1816 bp downstream
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	1391 bp proximal
Rr347429	regulatory region 347429	1185 bp distal
Rr347430	regulatory region 347430	416 bp proximal
Rr347431	regulatory region 347431	1816 bp proximal
Rr350215	regulatory region 350215	385 bp distal
Rr356493	regulatory region 356493	within coordinates