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rs47575572 SNP Detail
Summary
  • ID
    rs47575572
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:158798654 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAAA CAACTTCATG AATGCTTAAG
    W
    ATTTCAGTAA TATATCTTGA AGGTA                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss145854669 ENSMUSSNP3321904 ENSEMBL ENSEMBL_Sanger f SNP A T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs47575572 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:158798654 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1600012P17Rik RIKEN cDNA 1600012P17 gene within coordinates
Tssr9608 transcription start site region 9608 1249 bp downstream
Tssr14505 transcription start site region 14505 1567 bp upstream
Tssr14506 transcription start site region 14506 1388 bp upstream
Tssr14507 transcription start site region 14507 1377 bp upstream
Tssr14508 transcription start site region 14508 1335 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory