rs47575722 SNP Detail

Summary

• ID
  rs47575722
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102337421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAACTG AGATTTGAAC
  TGAGCCTCTG CTTCTTGGTA GAGACAAATG ACTGACCTTA TGTCACAGTG AACAGATGGA
  TTCAAAGAAG ACATTTAAAA AATACTAATT GAGCATGCAT ACAAAGAGAC CTGGATTGCA
  AGACTGGGTC ATACATTCTC TGCCTTAAAG TCAACCAAGT TCAAGGGAAT TGAAATCAAA
  M
  GGGGACATCT TTTTCATTTG TAATTGAATG TGTTTGTAAC TATGACTGAC TCTCAAAGGC
  CCTGAGAATA GGACACCATA GAGTGACTGG GGGAAGAGGC TCTTGCTTAT GAGGAGCACT
  TTGGACTTAA AAGTTTTGAA GACACGATCA AGTAACCTCA TTGGCTGATG AACTTATACA
  GAATAAAAAT AAGAACAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61043686	NES16084976	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47575722					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61043686	NES16084976	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102337421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	702 bp distal
Gm45527	predicted gene 45527	1995 bp upstream
Rr652623	regulatory region 652623	955 bp distal
Rr652624	regulatory region 652624	397 bp distal
Trim68	tripartite motif-containing 68	887 bp upstream
Tssr73953	transcription start site region 73953	916 bp upstream