rs47576789 SNP Detail

Summary

• ID
  rs47576789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTCTTTC TCTCTGGGTC TTTCTCTCAT
  GGTTTCCTGG TTTAGCAAGC TCAGGTGGGT ACAAACCTCC AGTCCTCTTC CTCCTCACTG
  TAGCTTTAGA GAGCCCCCTG GGAGGGAGCA CACCTTGTTC GAGGAGGAGT TGTGGGAGGA
  R
  GGAGTCTGGA GAAGGGTCTG GTAAGGCACC TAGGCCCCTT CCTTGACCCT GCCTCATTTT
  CTCGGGGGCC GGGATCCAGA AGCTAATGAT GTGTCATGCT GCTAAAGCAA TAGGGGAGGA
  ACCCAGTTTT CTGCAGATCT GGCCCTACTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145548369	ENSMUSSNP3281582	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss319993870	CHEV_1_137747061	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47576789					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778222 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	179 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	1039 bp upstream
Tssr9020	transcription start site region 9020	1636 bp downstream
Tssr9021	transcription start site region 9021	1616 bp downstream
Tssr9022	transcription start site region 9022	1128 bp downstream
Tssr9023	transcription start site region 9023	1054 bp downstream
Tssr9024	transcription start site region 9024	1018 bp downstream
Tssr9025	transcription start site region 9025	728 bp downstream
Tssr9026	transcription start site region 9026	530 bp downstream
Tssr9027	transcription start site region 9027	412 bp downstream
Tssr9028	transcription start site region 9028	374 bp downstream
Tssr9029	transcription start site region 9029	193 bp upstream
Tssr9030	transcription start site region 9030	228 bp upstream
Tssr9031	transcription start site region 9031	287 bp upstream
Tssr9032	transcription start site region 9032	870 bp upstream
Tssr9033	transcription start site region 9033	1715 bp upstream
Tssr13894	transcription start site region 13894	1631 bp upstream
Tssr13895	transcription start site region 13895	1587 bp upstream
Tssr13896	transcription start site region 13896	1060 bp upstream
Tssr13897	transcription start site region 13897	1032 bp upstream
Tssr13898	transcription start site region 13898	253 bp downstream
Tssr13899	transcription start site region 13899	321 bp downstream
Tssr13900	transcription start site region 13900	331 bp downstream
Tssr13901	transcription start site region 13901	892 bp downstream
Tssr13902	transcription start site region 13902	1753 bp downstream