rs47577671 SNP Detail

Summary

• ID
  rs47577671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTATT TAATATAAAA
  TATTCAATTT TCAAAAATTA AAAGCGAAGA TTCCCTGTAA GTTGACCAGA GACGATCTCA
  ACCACTACAG TACCTGCAAG AAAAAAAAAA AGGCCCATTA CAGAATATCC GTGACTATAC
  TACGGGCTGT TTACTTATGT TAATGTCAGC ACAAGAGCAA ACTTCACCCT AACAGTAAAG
  R
  CCCACTCACT ACCCAGAACC GCGAAAACAC CACAAAAATG AATCTTACCT TAACACTTCC
  TCCACTGTTC AACAGCAACG GGTCCCGGCG TTTCCTAGAA ATATTTCAAT ACTAGTTTAG
  AAAACTGAAG TCCATTTTTC TAGCGTCGTG TAGACTCTTA CAATCTTAGA ATGTCACTTG
  CTCAAGTCAG AATCTGGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60445530	NES15941779	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47577671					SNP	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445530	NES15941779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	170 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1171 bp downstream
Rr397991	regulatory region 397991	734 bp downstream
Rr584523	regulatory region 584523	849 bp distal
Rr584524	regulatory region 584524	714 bp distal
Rr584525	regulatory region 584525	606 bp proximal
Rr584526	regulatory region 584526	1151 bp proximal
Rr584527	regulatory region 584527	1542 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	169 bp downstream
Tssr31551	transcription start site region 31551	782 bp upstream
Tssr31552	transcription start site region 31552	820 bp upstream
Tssr35502	transcription start site region 35502	562 bp downstream
Tssr35503	transcription start site region 35503	1147 bp downstream