rs47578451 SNP Detail

Summary

• ID
  rs47578451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83078265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTTTCT CCTGTTGCTG
  CTGTAGCAAT CTGTCACGAA CTTCAAACAA TAGGAATTTA TCAGACATTT CTGGAGGGCA
  GAGTCTGGCT GCATCTCCAG ATCTGGTCTT CTGTCTTCAG GTTTTGTGAC TCTGCTGTCT
  GCCTCCCTCC CAGTCTGTTG GAAAGACTGG ACAGTTGAGG TTGTATTCAA TGATTTGTGT
  R
  ATCACTCCCT CTTGAGGCCC TTAGTCATAC CCGCAAATCC TTTTTGTTGT ATAGAGCAAC
  ACACCTGTGA TTTTGTGGAT TACAGCAGGG ACAACTTGAG AGTCCTTATT CTGTCTATCA
  CAATTAGAAG TAGACTCTAG GGCTTTCAGA AAATGTATTT AAAGGGGGCA TCATCTGGGG
  AGAATATCCT TTGCCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61658596	NES17605915	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A		A	A	G	A
ss137926459	ENSMUSSNP2757750	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47578451					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61658596	NES17605915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83078265 () rs orientation: forward

Symbol	Name	Function Class
Rgs6	regulator of G-protein signaling 6	within coordinates
Rr261712	regulatory region 261712	1536 bp proximal
Rr268571	regulatory region 268571	265 bp distal