rs47578771 SNP Detail

Summary

• ID
  rs47578771
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129159303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGAAATG CTGGTGTAGA ACTCTAAATA AATAAAATTA
  CCATTCTGAG TTTTTGAAAT GCCCAATAAC CATAAATGTG TTCCTTTAAT TCCTAACTTG
  C
  TAAGAGTTCT TGTTATTTTA GACTAATATT ATTTTTTTCA CATGATTTTG GTAAGCTTGT
  TAAAATGCTC CCATATTTTT ATCCATTAGT TATGTCAGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133654154	ENSMUSSNP6693493	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321948716	CHEV_6_129132358	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47578771					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129159303 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1975 bp downstream
Rr368193	regulatory region 368193	951 bp downstream
Tssr59096	transcription start site region 59096	1710 bp downstream
Tssr59097	transcription start site region 59097	1684 bp downstream
Tssr59098	transcription start site region 59098	1401 bp downstream
Tssr59099	transcription start site region 59099	1372 bp downstream
Tssr59100	transcription start site region 59100	1327 bp downstream
Tssr59101	transcription start site region 59101	1033 bp downstream
Tssr59102	transcription start site region 59102	979 bp downstream
Tssr59103	transcription start site region 59103	477 bp downstream
Tssr59104	transcription start site region 59104	407 bp downstream
Tssr59105	transcription start site region 59105	338 bp upstream
Tssr59106	transcription start site region 59106	362 bp upstream
Tssr59107	transcription start site region 59107	592 bp upstream
Tssr59108	transcription start site region 59108	658 bp upstream
Tssr59109	transcription start site region 59109	771 bp upstream
Tssr63546	transcription start site region 63546	493 bp downstream