rs47579522 SNP Detail

Summary

• ID
  rs47579522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97993349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGTGTT CGACTTTTAG
  GACTCCAACC CGGTTTATAG AAACCTTGGC ATTAGATTAG ATAAGCCGCC CTTACCTCCA
  GTTCCATGCC AATGCTCAGG AGGCCCTTGT CACTACAGTC CCTCCAGAAA CCCATTTTAC
  AGTACTATGA GGCAACCAAA AAGTATGCAT TGTACAAAGT CACTGTGAAC GTGGAGACTG
  R
  AAAGTGTGTA GCACACTTGC CCTGAAACGG GGGACTGAAA ACTGTGTAAC ACAGTCTCAC
  TGAAAATGGG GATCAAAATG TGTGTAGCAC ACTCATTCTA AATCAGGGGA CCGTCTGGCA
  CTTGGTAGCT GTTGAGAAAC CATCACCATT TCCCTTGAAA TCTTAAAATA TCTCCCAAAC
  ATATTACACA TTGCTCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914402	NES16220527	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47579522					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914402	NES16220527	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97993349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17778	CpG island 17778	1594 bp proximal
Mitf	melanogenesis associated transcription factor	within coordinates
Rr145432	regulatory region 145432	201 bp distal