rs47579785 SNP Detail

Summary

• ID
  rs47579785
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28525024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGATG CAGCGTGAGT
  TACCCCTTAA TCCGTGGGGG CTCGTTTTTG TGTCGTCTTG TTATAGCGGC GATAAGACGG
  GAAGTCTGCC TGGGTCGCTT TAAACTCAGG AGTCCTTTTG TAATTTAAAA TGAAATTATA
  ATTTTTTAGG TCTGTCTTTC AACCTGAATT CTTTGTCCCC AATCTTGGGT CATTTCCACA
  M
  ACAAGGGTCT AATGTAGTCT CAGACTGAAA CTTGGTTTTT CGAGACAGGA TTTCTCTGTG
  TAGGCCTGGC TATCCTGGAA CTCTCTGCAG ACTAGGCTGG CCTCGATCTG AGATCGGACT
  GCTTCTGCCT TCCAAATGCT GCCTCCCAAC CACCTCCTGG CTTGCATACC CTAATCTTAA
  AAGTTATGTC TGGTCATGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988277	NES16135254	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47579785					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988277	NES16135254	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28525024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18723	CpG island 18723	106 bp distal
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	1377 bp proximal
Rr167384	regulatory region 167384	within coordinates
Rr380577	regulatory region 380577	within coordinates
Tssr65547	transcription start site region 65547	384 bp downstream
Tssr65548	transcription start site region 65548	314 bp downstream
Tssr65549	transcription start site region 65549	285 bp downstream
Tssr65550	transcription start site region 65550	236 bp downstream
Tssr65551	transcription start site region 65551	1923 bp upstream