rs47580671 SNP Detail

Summary

• ID
  rs47580671
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12197351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATACCT CCAAGGACAA
  AGGGTGACTA CTACTGTCAT TCTTACAAGC AAGGGCTGAA GAAAGAGGTA TCTTTGAAAA
  TTGCATGTGA GGACTTCAAA GCACAAACGG GATCCGAGGC TCTGCAGGCC TTTACTGAGC
  ACCAAACACC GTGTTTGACA ATATACACAC AACAGGCAGA CTAGGTTCTA AAGCTGCACT
  K
  CAGTCTGGCC ACATCCCATC TTTCCAACAG TGCCCTCTCC TCCCTCATCT CTTAGCATAT
  GGCACCACCC CCCCACATCC ACCAAGTTAG GCTCGAAGAG ATGTTAGGTG TGTAAATGCA
  TCCCTCTTGC CCAGCTAGCT TCATCCCTGC TCTTCTGACT AGAATGTTCC CTTCTTCCAA
  AAGTGTGTTT GAGATACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61744042	NES17670700	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47580671					SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744042	NES17670700	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12197351 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	252 bp downstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	247 bp downstream