rs47581267 SNP Detail

Summary

• ID
  rs47581267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136149394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAAGAG CCATTTTAGA
  AAACACATAG GATGTTGTCT GTCTATCATC TTCAAACATC ACAAATGCAA ACCAATTCCC
  CGGTCTTAAA AGCAAGAATT CCTGTGGTAC CCACAAGAGA AGTCAGGGTA GAGAGCTGGG
  CTGTGGGGAC TCATGAGACC AACTTAGGTT GGGGTCTGGC CAGCTGGCCC TGAGATTAGT
  Y
  GTGTCCACAA GTGCTCTGCA AGTCGCCTGA GGAAGATGGA GCACAGGGCA GCTTCATGTG
  AAACAGTTGC AGCTATCACT TAGGGAAACT GGGGGGCTTT GTTACTTTTG CCCTTCAACA
  GATACAGTGC TCTGGAGTCT GAGGCTGAGT CCCTGTGACC CACACGGAAC CCAGAAATCA
  TTTTCAACTG CTTGACGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss145554246	ENSMUSSNP4897577	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47581267					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136149394 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1264 bp upstream
Tssr9051	transcription start site region 9051	922 bp downstream