rs47581548 SNP Detail

Summary

• ID
  rs47581548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12654787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG ATAAAATTAG GTAAGATTCC
  Y
  GAAATCCCAG TTTTCCCTCC CTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106836	CHEV_7_13506209	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47581548					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12654787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	820 bp proximal
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	1436 bp upstream
Rr368230	regulatory region 368230	1205 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	1231 bp proximal
Rr642404	regulatory region 642404	1516 bp proximal
Tssr64485	transcription start site region 64485	1455 bp upstream
Tssr70626	transcription start site region 70626	1210 bp downstream