rs47581650 SNP Detail

Summary

• ID
  rs47581650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35388572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTGGG TACCAAATGT
  GCTCTGCTGG AGCAATGAGG GGGAAGCAGG GGTTGCCTAG TACTTATTAG TGCAGTGGCC
  TCTTTGGGAC ATGTGTAATA AATATACATT TGCACTTATA ATGTGTACCC CTGCACTTTC
  AAAGAGCCAC TGCTCATTCT TGTGCCCTAC ATTTTTCAAA ACAATAGGAG ACAAAACCTG
  Y
  TTTTTATGTA CTAATTTGTT CTGTTTGCAA ATAACTCTGA AGTTGCTGGG GAAGGAAGCT
  AGTATGTCAA ACTAATACAG GGAGCGTTTC AGTGGGGCTG GAGAGCTGTA ATATGATTTC
  TAGGACTTCA TGGGAAAGTT GAATACTCAA GGGGAAATTA TAGAAAGAAC AGCTGAGAAG
  AAGTTGCATT CTGGCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60386835	NES15880919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs47581650					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386835	NES15880919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35388572 () rs orientation: forward

Symbol	Name	Function Class
Rr67159	regulatory region 67159	229 bp proximal