rs47583086 SNP Detail

Summary

• ID
  rs47583086
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24849357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTCTAAA ACACCTGTGA
  GTCTAGAGTC TATTGCTATT TTTTTACTCT TTGGTTTTCT GTAATCGATT CATGTTTTTG
  GTGTGTCCAG TATTTTATTC TAACAGCTTT ATTGAGAGAT AATTGACATT CACCAAATTG
  GAAATATTTA AAATATTTGA TGATGTTTAC CATCATCATA ATTGTGATGG TTTGTATATG
  M
  TTGGCCCCAG AAGTAGCACT GTTGGAAGGT GTGGCCTTTT TGGATAGGTG TGGCTTTGTG
  GGTGTGGGCT TTAATACCCT TGTCCTAGCT TCCTGGAAGC CAGTCTTCTC TTAGCAGCCT
  TCAGAAGATG TAGAACTCTC AGCTCCTCCT GCACCATGCT TGTCTGGATG TTGCCATGTT
  CCTGCCTTGA TGACAACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148098451	ENSMUSSNP4667800	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47583086					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24849357 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	1088 bp upstream
Tssr45439	transcription start site region 45439	1106 bp upstream
Tssr45440	transcription start site region 45440	1123 bp upstream
Tssr45441	transcription start site region 45441	1135 bp upstream
Tssr45442	transcription start site region 45442	1142 bp upstream