rs47583786 SNP Detail

Summary

• ID
  rs47583786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25210589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAGACA CAGGATCCAC
  CAAGGAAGCT AGGCAACCCA ATTACTGAGC TGAACATTTA TTAAGAGACT CTGCCTCTGA
  AAATATAATT GAGAGTGGAA ATTAGGAGGA AGCAGTTGAT GTTAAACTTT CCTTAGCAGA
  TACACATACA TGAATCTACA TATACGCCTG ACACATGCAC ATTCACAAAG AAAAATTTAA
  R
  AATAGCAAAG TGATGTTTTT ATATGCTCCA GTAGTATTAG GGTGTCTTTG CCTATTGTTC
  CTTGTTAGTT CCACTGTATA GTTCTGTGCC AGTACTAAAC CTTAAACCTA AATCCTTGGT
  TTTATTTCCA TATTCCTTTG AAAAGCTTTA TTGAAGTTAA CATGTGTGGT CTGTTTTCTT
  TTACTTTTTT TTCTACAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61362694	NES16739069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47583786					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61362694	NES16739069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25210589 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1467 bp downstream
Tssr84137	transcription start site region 84137	1447 bp downstream
Tssr84138	transcription start site region 84138	1410 bp downstream
Tssr84139	transcription start site region 84139	187 bp upstream