rs47585777 SNP Detail

Summary

• ID
  rs47585777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75929663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATATATT ATATATGAGT
  ACTTCAAATT ATTTGGATGA GACATCACCA AATCAGGGTG ACCCACCCTC AGATAATCCA
  TAGAGGGAGA ATATTTAAGG GTCCAATGAA AATATTCTGT TCAGTTATAG TATCTAGCCA
  CTATGGCCGG GGAACTGCTT CAGCAGATAG ATCCGTTGTA ATTGCCACCC GGTACCTATA
  Y
  GTTAGGATGT AAGCATCCCG TCTTGCATGC TCAGGAAATG TCTCTGGTTA TAACAGAAGC
  AGTGGGGAGG CCCGAGGGGG ACTGAAAGTC ACCATCTGAA AGCTGTGCGC ATACTGAGAT
  GGAAGGACAG CAACAGTACG CTATGCTCCT TTATCCTTTC TAGGGGAAAT GGTCTTTCTT
  AGCTACCTGT GCCCACTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146770229	ENSMUSSNP1123220	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47585777					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75929663 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1821 bp distal
Rr559648	regulatory region 559648	445 bp distal
Rr559649	regulatory region 559649	277 bp proximal