rs47586461 SNP Detail

Summary

• ID
  rs47586461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTATGACC AAGACCATGT CAGAGCCTCC CCTAGAGCCT
  TAAGGTATCA TCTATAATGG GTCAGCTAGG TGGGGGGGGG GGGGCGCATG CCTTTACTTC
  Y
  GGTATTCTTC TCCTAAACCC TTAAGATGTC ATATGTAATC AGTCACCTGG GTGGTGGTGG
  TGCATGCCTT TATTTCCAGG ACTTGGGTGG CAAAGGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148114611	ENSMUSSNP6661761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320588870	CHEV_2_158207132	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47586461					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223316 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1730 bp downstream
Rr397444	regulatory region 397444	1315 bp downstream
Rr568752	regulatory region 568752	1225 bp distal
Rr568753	regulatory region 568753	1469 bp distal
Rr568754	regulatory region 568754	1431 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	within coordinates
Tssr21318	transcription start site region 21318	774 bp upstream
Tssr21319	transcription start site region 21319	1173 bp upstream
Tssr21320	transcription start site region 21320	1212 bp upstream
Tssr21321	transcription start site region 21321	1304 bp upstream
Tssr21322	transcription start site region 21322	1449 bp upstream
Tssr21323	transcription start site region 21323	1496 bp upstream
Tssr21324	transcription start site region 21324	1528 bp upstream
Tssr21325	transcription start site region 21325	1568 bp upstream
Tssr21326	transcription start site region 21326	1590 bp upstream
Tssr21327	transcription start site region 21327	1639 bp upstream
Tssr21328	transcription start site region 21328	1677 bp upstream
Tssr21329	transcription start site region 21329	1690 bp upstream
Tssr21330	transcription start site region 21330	1712 bp upstream
Tssr27228	transcription start site region 27228	1805 bp downstream