rs47586663 SNP Detail

Summary

• ID
  rs47586663
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35905840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCTTCAG TTTTGCAGGA TTGGATCTAG TGGAACAACA
  ACTGGTAGAG AGTAGAAGCC ATTCAGTTAA GAAAACCGAA CGTTGAAAAC CGCCGGAGAA
  G
  TTCCTTTCAC AGACTTCTTC CAAAATGATT TTAACCCTGA AAATATATAC TATGTTTGCT
  GAGACTTCCA ATTTAGAAGG GATTTTACTC TATTTTTGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146946364	ENSMUSSNP5081989	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47586663					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35905840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	294 bp distal
Rr393530	regulatory region 393530	542 bp downstream
Rr535947	regulatory region 535947	1219 bp distal
Rr535948	regulatory region 535948	1 bp distal
Tssr150551	transcription start site region 150551	1419 bp downstream
Tssr150552	transcription start site region 150552	1300 bp downstream
Tssr150553	transcription start site region 150553	1229 bp downstream
Tssr150554	transcription start site region 150554	1188 bp downstream
Tssr150555	transcription start site region 150555	1172 bp downstream
Tssr150556	transcription start site region 150556	1116 bp downstream
Tssr150557	transcription start site region 150557	1077 bp downstream
Tssr150558	transcription start site region 150558	1046 bp downstream
Tssr150559	transcription start site region 150559	833 bp downstream
Tssr150560	transcription start site region 150560	656 bp downstream
Tssr150561	transcription start site region 150561	622 bp downstream
Tssr150562	transcription start site region 150562	1014 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates