rs47587640 SNP Detail

Summary

• ID
  rs47587640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:140428750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGAGCAC CGGCCTACAG
  CTTCCGTGGG GCTCCCATGC TCTTGGCGGA GAATTGCTCC CCAGGGCCCC GCTACAGTGT
  GAACCCCAAG ATCCTGAAGA CTGGCAAGGA CCTTGGCCCT GCCTACTCCA TCCTGGGGCG
  CTACCATACC AAGACCTTGC TGACCCCCGG CCCGGGTGAG TAACCCCTAC CTTCTGCTCC
  R
  GGCCCTAATA TGCATGTCCA GCTCTGTGAA GGCCAGATGG CCTCATTTCT CCTGCTCCTG
  GGAACAGACA CTGTCAGGCC TGAACAGCAG AGCCTGAAGC CCACCAACCC TACTCTACCT
  GGAGTCCAGG GACAAGGCCC ACACCAGATC TCATGCTCAC TGCTTGAAAA CAACCCTGGA
  GCCTGTATTT CTACTGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072221	NES16047761	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47587640					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072221	NES16047761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140428750 () rs orientation: forward

Symbol	Name	Function Class
Cimap1a	ciliary microtubule associated protein 1A	Intron
Gm45785	predicted gene 45785	Intron
Rr657759	regulatory region 657759	755 bp distal
Rr657760	regulatory region 657760	542 bp proximal
Tssr69848	transcription start site region 69848	1077 bp downstream
Tssr69849	transcription start site region 69849	1058 bp downstream
Tssr69850	transcription start site region 69850	1044 bp downstream
Tssr69851	transcription start site region 69851	1024 bp downstream
Tssr69852	transcription start site region 69852	1008 bp downstream
Tssr69853	transcription start site region 69853	989 bp downstream