rs47588727 SNP Detail

Summary

• ID
  rs47588727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115925079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCG TTCCTTCACC AAACATCACG
  Y
  CTGTGTCTCA GATGTAAAAT ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894379	CHEV_3_115834348	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47588727					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115925079 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	829 bp distal
Gm43109	predicted gene 43109	within coordinates
Rr583657	regulatory region 583657	1619 bp distal
Tssr35298	transcription start site region 35298	1966 bp upstream
Tssr35299	transcription start site region 35299	1806 bp upstream
Vcam1	vascular cell adhesion molecule 1	1742 bp upstream