rs47588954 SNP Detail

Summary

• ID
  rs47588954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61912717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACTAAG AGACCAGAAC
  GTATTTTCCA CAGTGCATTT CATGCATATT GATTTAAAAA GATGGGCAGA ACATAATCTA
  GAATAAGAAT AGCTAGGCTG TTGTGGTGCT TCCGTAGTTA CAAGTCTGAT GACTTACTGA
  AACCTACTGT GGCACAAGAG AACCAAGTCC CCAACATTGT CTTTTGACCT CTCCAGGCAT
  R
  ATTTGGCATA TTTTCTAGCT TACACACACA CACACACACA CACACACACA CACACACACA
  CACAACTTTG GAGCTAGGTG TGGTGGTTCA TGCCTATAAT CCAAGGATAT GGGAAGTTGA
  AGCAGGAGGA TAAGCGTGAG TTCAAGGCCA GCCTTAGCTG TAGGCCAGTT GAACTACAGC
  TTGTCTCAAA ATTTAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563379	NES15634447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47588954					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563379	NES15634447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61912717 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	792 bp downstream
Rr503089	regulatory region 503089	1471 bp distal
Rr503090	regulatory region 503090	1210 bp distal
Tssr131428	transcription start site region 131428	1606 bp downstream
Tssr131429	transcription start site region 131429	1576 bp downstream
Tssr134486	transcription start site region 134486	1714 bp upstream
Tssr134487	transcription start site region 134487	1696 bp upstream