rs47589877 SNP Detail

Summary

• ID
  rs47589877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15884656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACTACA GAATATGGAG
  TTTTAGTTAT CCAGCACTGG CCCTTCTTGC TCTTCCTTGT GTGGAGACAA CAGCACTGGG
  GCTGCCTGCT GCTCAGCTTA CCATGCCCTC TGATGAGACG TGAGCAGAGT CGATGTTCCC
  TGCTACTGTA CTCCTGGACG TGCTGTTGGT TCTCCCAGCT TAGAGGTGAC ACTGTTATAT
  W
  CAAATTTTTC CTAGCCACTT TCAGTACCTG GAGAAAGTCT AGAGCTTTCC CCACCCTGCC
  ACAGGCAAGG ACTGTCAGGG GACCTGGACA GTTGTTATCC TTCCTCTTTC TTTCAGTTCA
  TAAGAAAGTA CTAGGACCCA GGGTGCCTCT GGAGACCTCT CAAGTTCAGC TCTTCAGATG
  TGTCAGCAGG ACACAGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61752005	NES17684356	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47589877					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61752005	NES17684356	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15884656 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2117	regulatory region 2117	1671 bp upstream
Rr2187	regulatory region 2187	within coordinates
Rr475254	regulatory region 475254	1691 bp distal