rs47591850 SNP Detail

Summary

• ID
  rs47591850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140426831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAATAAAT TCACCCTCGA
  ACTGTTAAAT CAATAAAGCC TACTGCAGCC CATGTGCTGG CTTCTCTCTC TCCCTGCAAC
  ACAGGGACAC ACAAAAAGTC CTATCAGAGG CACCCTGAGA GATAAACCAA AAGATGCAAA
  CTCATAATGC AAGGTCACTT TCCGGAAGCA ATGTGTGAGG TCGGCCTCGG GAAACCACGT
  R
  AACACAGGGA GCTATCTAGG AAGGATGGGG ATAAAAGGAG CCTAACACAG AAAGGCAGGC
  TGGCAGGGCT TATGCATAAA AAAAATAATA ATAATAAGGC AAGAGCACAG CCAACTGATG
  CATACGTTCT GGGAGCTTTG AAAACAACCT CTCTTCCCAA AATCACCCGA GGAAAGAGAG
  TCCAGCCTGA GTCAGAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072229	NES16047749	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47591850					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072229	NES16047749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140426831 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1229 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	998 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr400701	regulatory region 400701	1779 bp downstream
Rr657754	regulatory region 657754	1902 bp distal
Rr657755	regulatory region 657755	1361 bp distal
Rr657756	regulatory region 657756	1500 bp distal
Rr657757	regulatory region 657757	1139 bp distal
Rr657758	regulatory region 657758	965 bp distal
Rr657759	regulatory region 657759	997 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	149 bp downstream
Tssr69847	transcription start site region 69847	1351 bp downstream
Tssr69848	transcription start site region 69848	836 bp upstream
Tssr69849	transcription start site region 69849	852 bp upstream
Tssr69850	transcription start site region 69850	866 bp upstream
Tssr69851	transcription start site region 69851	883 bp upstream
Tssr69852	transcription start site region 69852	898 bp upstream
Tssr69853	transcription start site region 69853	925 bp upstream