rs47592446 SNP Detail

Summary

• ID
  rs47592446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCAACA ATAGTAACTG
  GAAAATGGCC TATAACAGCA AAATAATGAC ATGTGTTATA TTATTACCTA AAAACACATA
  ATCTTTAGAA GTCATTACTT AGTGTTTATC TGTTGTAATG GTTGGATATT TCCAGCTTTT
  ATTGACCATT AATATTAACC CTTCTCAGAA AAGAACCCAG GCTGATAAAC TTTGACTTTT
  R
  GGAGACTGTA GCTGGATGGT TTTTTCCTTT TTTTTTTTTT TTTAAAGAAA AGTACTTCTA
  TATTTTATCA CACACTTTTT GAGGGATACA CTAAATTCCT TTTGTAAGTC CTTTACAAAA
  AATACTTCAG AATAAATGTC ATGTACCATG CAAATTTACT TCCACTGTGT ATAGCAATGT
  AAATATAATA GACCTCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135386123	ENSMUSSNP5455184	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320812959	CHEV_3_80715318	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47592446					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1674 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1142 bp upstream
Gm65109	predicted gene, 65109	1825 bp upstream
Rr578673	regulatory region 578673	1411 bp proximal
Rr578674	regulatory region 578674	1836 bp proximal