rs47592931 SNP Detail

Summary

• ID
  rs47592931
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164264260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCAGAAAG TGTAATTTTT TTATCTTTTC TGACACTAAG
  GCCATTTATT AAATATGGCC AAGAAAGTAC ATCCTGAACC AGAGGGAGAT GCACACATTT
  M
  ATTCCCTGAG TCTCAAACCT AAAATTTAAT TTAACCAATA GAAACATTTA CACACACACA
  CACACACACA CACTCAGCGA ACACTTTGTT GAGCTATGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337255	NES15839901	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47592931					SNP	A	A	A	A	A	A	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337255	NES15839901	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164264260 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	418 bp downstream
Nme7	NME/NM23 family member 7	within coordinates
Tssr9784	transcription start site region 9784	1784 bp upstream
Tssr14731	transcription start site region 14731	725 bp downstream
Tssr14732	transcription start site region 14732	1048 bp downstream
Tssr14733	transcription start site region 14733	1157 bp downstream
Tssr14734	transcription start site region 14734	1185 bp downstream
Tssr14735	transcription start site region 14735	1253 bp downstream
Tssr14736	transcription start site region 14736	1286 bp downstream
Tssr14737	transcription start site region 14737	1349 bp downstream
Tssr14738	transcription start site region 14738	1484 bp downstream
Tssr14739	transcription start site region 14739	1650 bp downstream
Tssr14740	transcription start site region 14740	1704 bp downstream
Tssr14741	transcription start site region 14741	1733 bp downstream
Tssr14742	transcription start site region 14742	1840 bp downstream